Fig. 2
From: The first chromosome-scale genome assembly of a microcyclic rust, Puccinia silphii
a) Comparative genomics and phylogenetic tree for Puccinia silphii and five other species in the Puccinia genus. All genomic assemblies within the Puccinia genus were annotated using a standardized pipeline with EDTA, RepeatMasker and BRAKER. While P. silphii contains the least repetitive content (TEs), it also has much less protein-coding sequence than the other Puccinia genomes. The highest values in each column are bolded. The phylogeny was inferred using maximum likelihood under a WAG + Γ substitution model in RAxML and is rooted in the outgroup Melampsora larici-populina