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Table 5 Experiments performed using BenchAMRking platform

From: BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows

EXPERIMENT 1

Aim - To check WF AMR predictions based on the use of the same assembler (SA)

Methodology - WF2 Assemblies were used as an input of the four WF using ten samples (Table 4)

Tools - Spades v3.15.5 / BenchAMRking

Samples − 10 samples from abritAMR (Table 4)

EXPERIMENT 2

Aim - To check WF AMR predictions based on using a different assembler (DA)

Methodology - WF2 and shovill assembler for 10 samples (Table 4)

Tools - Spades v3.15.5 / shovill v1.0.4 / BenchAMRking

Samples − 10 samples from abritAMR (Table 4)