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Fig. 3 | BMC Genomics

Fig. 3

From: BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows

Fig. 3

(a) Heatmap representation of the relationships of AMR genes detected in the workflows included in BenchAMRking. Green colour represents gene presence/absence. AMR genes are clustered based on identification by different workflows. SA: same assembler; DA: different assembler. WF – Workflow number SA: same assembler; DA: different assembler. Samples are numbered in the order shown in Table 4. The supplemental data for the heatmaps are both the Binary and Identity excel files in the scripts repository at https://github.com/ErasmusMC-Bioinformatics/BenchAMRking-scripts/tree/main. (b) Heatmap representation of the identity of AMR genes detected in the workflows included in BenchAMRking. Colours represent different values of AMR gene identity between the different workflows. SA: same assembler; DA: different assembler. Samples are numbered in the order shown in Table 4. The supplemental data for the heatmaps are both the Binary and Identity excel files in the scripts repository at https://github.com/ErasmusMC-Bioinformatics/BenchAMRking-scripts/tree/main

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BMC Genomics

ISSN: 1471-2164

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